Strawberry Cheesecake Cupcakes: A Taste of Summer Memories

Posted on November 19, 2025 by Maryann Desmond

Warm afternoons spent picking sun-ripened strawberries with Grandma come flooding back every time I bake these delightful cupcakes. There’s something truly magical about combining the creamy richness of cheesecake with the sweet-tart burst of fresh strawberries in a perfectly portable treat. These little gems capture the essence of those cherished family gatherings where simple desserts brought everyone together around the kitchen table.

Why This Recipe Works

  • The graham cracker crust provides that classic cheesecake foundation we all love, creating a sturdy base that holds up beautifully against the creamy filling while adding just the right amount of sweetness and texture contrast.
  • Using both fresh strawberry puree and chopped berries gives you double the strawberry flavor – the puree blends seamlessly into the cheesecake batter for even distribution, while the chopped pieces create delightful bursts of fruity goodness in every single bite.
  • The cream cheese filling strikes the perfect balance between rich and light, with just enough sugar to sweeten without overwhelming the natural tanginess that makes cheesecake so irresistible, creating that melt-in-your-mouth quality we crave.
  • Baking in a water bath ensures gentle, even heating that prevents cracking and gives you that smooth, professional-looking surface while keeping the texture incredibly creamy and luxurious from edge to center.
  • Chilling overnight allows all the flavors to meld together beautifully, giving you that authentic cheesecake experience where each component harmonizes perfectly rather than competing for attention on your taste buds.

Ingredients

  • 1 ½ cups graham cracker crumbs (about 12 full sheets)
  • 5 tablespoons unsalted butter, melted and slightly cooled
  • 2 tablespoons granulated sugar
  • 16 ounces cream cheese, softened at room temperature
  • ¾ cup granulated sugar
  • 2 large eggs, at room temperature
  • 1 teaspoon pure vanilla extract
  • ½ cup sour cream, at room temperature
  • 1 cup fresh strawberries, hulled and finely chopped
  • ½ cup fresh strawberry puree (from about ¾ cup whole strawberries)
  • Pinch of salt

Equipment Needed

  • Standard 12-cup muffin pan
  • 12 cupcake liners
  • Mixing bowls (various sizes)
  • Electric hand mixer or stand mixer
  • Measuring cups and spoons
  • Rubber spatula
  • Food processor or blender
  • Roasting pan or baking dish large enough to hold muffin pan
  • Wire cooling rack

Instructions

Strawberry Cheesecake Cupcakes

Prepare the Graham Cracker Crust

Begin by creating that beloved graham cracker foundation that makes these cupcakes so special. In a medium mixing bowl, combine your graham cracker crumbs with the melted butter and two tablespoons of granulated sugar. The butter should be melted but not piping hot – you want it just warm enough to help the crumbs cling together without making them greasy. Mix everything with a fork until the crumbs are evenly moistened and the mixture resembles wet sand. When you squeeze a handful, it should hold its shape briefly before crumbling. This is your signal that you’ve achieved the perfect consistency. Line your muffin pan with cupcake liners and press about two tablespoons of the crumb mixture into the bottom of each liner, using the back of a spoon or your fingers to create an even, compact layer. Don’t press too firmly – you want it packed enough to hold together but not so tight that it becomes rock-hard after baking. Tip: For the most consistent crust thickness, use a small flat-bottomed glass or measuring cup to press the crumbs evenly across each liner base.

Create the Strawberry Cheesecake Filling

Now for the heart of our cupcakes – that creamy, dreamy cheesecake filling infused with fresh strawberry goodness. In your mixer bowl, beat the softened cream cheese on medium speed for about two minutes until it’s completely smooth and free of any lumps. Scrape down the sides and bottom of the bowl thoroughly – those hidden lumps can ruin your smooth texture later. Gradually add the three-quarters cup of sugar while continuing to beat, then incorporate the eggs one at a time, mixing just until each disappears into the batter. Overbeating at this stage incorporates too much air and can cause cracking. Add the vanilla extract, sour cream, and that pinch of salt, mixing until everything is beautifully combined. Now gently fold in your strawberry puree and chopped berries using a rubber spatula, being careful not to overmix. The batter should be smooth with visible berry pieces distributed throughout. Tip: For the best strawberry flavor, use berries at peak ripeness – they should be deep red throughout and fragrant when you bring them close to your nose.

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Assemble and Prepare for Baking

Carefully spoon the cheesecake filling over your prepared crusts, dividing it evenly among all twelve liners. I like to use a cookie scoop or two spoons for this task – it gives me better control and helps prevent messy drips down the sides of the liners. Fill each cup nearly to the top, leaving just about a quarter-inch of space to allow for slight rising during baking. Gently tap the filled pan on your countertop two or three times to release any air bubbles that might be trapped in the batter. Now prepare your water bath by placing the muffin pan inside your larger roasting pan and carefully pouring hot water into the outer pan until it reaches about halfway up the sides of the muffin cups. This water bath technique is crucial – it creates a steamy environment that bakes the cheesecakes gently and evenly, preventing that unattractive cracking and ensuring the creamiest possible texture from edge to center.

Bake to Perfection

Place your carefully assembled water bath setup into a preheated 325°F oven and bake for 22-26 minutes. You’ll know they’re ready when the edges look set but the centers still have a slight jiggle when you gently shake the pan – think of the movement similar to set Jell-O rather than liquid batter. The tops should be dry to the touch and may have developed the faintest golden hue around the very edges. Avoid the temptation to overbake waiting for the centers to become completely firm – they’ll continue setting up as they cool. Carefully remove the entire setup from the oven and let the cupcakes cool in the water bath for about 30 minutes. This gradual temperature change helps prevent sudden contraction that can lead to surface cracks. Then transfer just the muffin pan to a wire rack to cool completely to room temperature, which typically takes another hour or so depending on your kitchen’s temperature.

Chill and Serve

Once your cupcakes have reached room temperature, cover the muffin pan loosely with plastic wrap or transfer the cupcakes to an airtight container if you prefer. Refrigerate for at least 6 hours, though I strongly recommend overnight chilling for the absolute best flavor and texture development. This extended chilling time allows the flavors to meld beautifully and gives the structure time to firm up properly. When you’re ready to serve, you can enjoy them straight from the refrigerator or let them sit at room temperature for 15-20 minutes to take the chill off. The graham cracker crust will have firmed up nicely, the cheesecake filling will be luxuriously creamy, and the strawberry pieces will provide little bursts of fresh fruity flavor. Tip: For easy removal from liners, gently peel the paper away while rotating the cupcake – the chilled cheesecake should hold its shape perfectly without sticking.

Tips and Tricks

Getting these strawberry cheesecake cupcakes just right involves paying attention to some finer details that can elevate them from good to absolutely extraordinary. Room temperature ingredients are non-negotiable for achieving that perfectly smooth, lump-free batter. Take your cream cheese, eggs, and sour cream out of the refrigerator about two hours before you plan to bake. Cold cream cheese will never incorporate smoothly no matter how long you beat it, and cold ingredients can cause the batter to break or become grainy. If you’re short on time, you can speed up the process by placing sealed packages of cream cheese in a bowl of warm (not hot) water for 15-20 minutes, and you can warm eggs by placing them in a bowl of warm water for 5-10 minutes.

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When preparing your strawberries, quality makes all the difference. Seek out berries that are deeply colored with vibrant green caps and that sweet strawberry fragrance that makes your mouth water. Avoid any with white shoulders or mushy spots. For the puree, simply hull your berries and blend them in a food processor or blender until completely smooth. You don’t need to strain out the seeds unless you prefer – I find they add a nice rustic texture and extra fiber. If your strawberries aren’t as sweet as you’d like, you can toss the chopped berries with a teaspoon of sugar and let them macerate for 15 minutes before adding to the batter – this draws out their natural juices and intensifies their flavor.

The water bath might seem like an extra step, but it’s the secret to professional-looking results. Make sure your muffin pan is sturdy and doesn’t have any leaks – if you’re uncertain, you can wrap the bottom in aluminum foil before placing it in the water bath. Use hot tap water rather than cold to help maintain oven temperature, and be careful when transferring the pan in and out of the oven. I find it helpful to place the roasting pan on the oven rack first, then pour in the water, rather than carrying a full pan of water. If you notice the water level getting low during baking, you can carefully add more hot water using a measuring cup with a spout.

Storage is straightforward but important for maintaining quality. These cupcakes will keep beautifully in the refrigerator for up to 5 days when stored in an airtight container. You can also freeze them for up to 3 months – place them in a single layer on a baking sheet until frozen solid, then transfer to freezer bags or containers. Thaw overnight in the refrigerator before serving. If you want to dress them up for special occasions, a dollop of freshly whipped cream and a slice of fresh strawberry on top makes them look bakery-worthy, or you can drizzle them with a simple strawberry sauce made from reduced strawberry puree and a touch of honey.

Recipe Variations

  • For a decadent chocolate twist, replace the graham cracker crust with an Oreo cookie crust by using 1 ½ cups of Oreo crumbs (including the filling) mixed with 3 tablespoons of melted butter. You could also fold in ½ cup of mini chocolate chips to the cheesecake batter and drizzle the finished cupcakes with chocolate ganache for the ultimate chocolate-strawberry combination that will satisfy any sweet tooth.
  • Create a stunning swirl effect by reserving ½ cup of plain cheesecake batter before adding the strawberry components. After filling the cupcake liners, dollop small spoonfuls of the plain batter on top and use a toothpick to gently swirl it through the strawberry batter. This creates beautiful marbling and offers a lovely contrast between the pure cheesecake and strawberry-infused sections in every single bite.
  • Experiment with different berry combinations based on what’s in season or your personal preferences. Raspberry cheesecake cupcakes can be made by substituting raspberries for strawberries, while mixed berry versions using blueberries, blackberries, and strawberries offer complex flavor profiles. For tropical flair, try mango puree with coconut extract instead of vanilla, and use crushed vanilla wafers or shortbread cookies for the crust instead of graham crackers.
  • For those who enjoy different texture experiences, consider adding ½ cup of toasted coconut flakes to the crust mixture or sprinkling some on top before baking. You could also mix in ⅓ cup of chopped white chocolate or toasted pecans to the cheesecake batter for additional richness and crunch. Lemon zest lovers can add the finely grated zest of one lemon to the batter to create strawberry-lemon cheesecake cupcakes that taste like sunshine.

Frequently Asked Questions

Can I use frozen strawberries instead of fresh?

Absolutely, frozen strawberries work quite well in this recipe, though there are a few considerations to keep in mind. First, thaw the berries completely and drain off any excess liquid before pureeing or chopping them, as extra moisture can affect the baking time and final texture of your cupcakes. Frozen berries often release more liquid during baking, which might require extending the baking time by 2-4 minutes. The flavor might be slightly less vibrant than peak-season fresh berries, but the convenience factor makes them a great option when fresh aren’t available. I don’t recommend using frozen berries without thawing first, as the cold temperature can shock your batter and the ice crystals can create unwanted texture issues in your finished cupcakes.

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Why did my cheesecake cupcakes crack on top?

Cracking typically occurs due to one of three common issues: overmixing the batter, overbaking, or rapid temperature changes. When you overmix after adding the eggs, you incorporate too much air that expands during baking then collapses as the cupcakes cool, creating surface cracks. Overbaking causes the proteins to tighten too much and pull apart. The most common culprit is skipping the water bath or removing the cupcakes from the oven directly to a cool environment. The water bath provides gentle, even heat that prevents sudden expansion and contraction. If you do get minor cracks, don’t worry – they’ll still taste delicious, and you can always cover them with a pretty strawberry garnish or whipped cream before serving.

Can I make these without a water bath?

While I strongly recommend using a water bath for the creamiest texture and crack-free surface, you can bake these without one if necessary. Place a pan of hot water on the rack below your cupcakes to create steam in the oven, and reduce the baking temperature to 300°F. The baking time may increase by 5-8 minutes, and you’ll need to watch them carefully for doneness. The texture will be slightly denser and they’re more likely to develop surface cracks, but they’ll still be quite tasty. For the best results with this method, make sure all your ingredients are properly at room temperature and avoid opening the oven door during the first 20 minutes of baking to maintain a consistent temperature.

How do I know when the cupcakes are perfectly baked?

The visual and tactile cues are your best guides for determining doneness. At around 22 minutes, begin checking your cupcakes by gently shaking the pan – the edges should look set and slightly puffed, while the centers should show a distinct jiggle when moved, similar to firmly set Jell-O. The tops will be dry to the touch and may have the faintest golden tint around the very edges. A toothpick inserted near the edge should come out clean, but if inserted in the center it might have some moist crumbs attached. Remember that cheesecake continues to cook from residual heat after being removed from the oven, so it’s better to slightly underbake than overbake. They’ll firm up beautifully during the cooling and chilling process.

Can I make these cupcakes ahead of time for a party?

These strawberry cheesecake cupcakes are actually ideal for making ahead – they need that extended chilling time to develop their full flavor and perfect texture. You can prepare them up to two days in advance and store them covered in the refrigerator until serving time. If you need to make them further ahead, they freeze wonderfully for up to three months. Place them in a single layer on a baking sheet until frozen solid, then transfer to airtight freezer containers or bags. Thaw overnight in the refrigerator before serving. The crust may soften slightly after freezing, but the flavor and overall quality remain excellent, making them a fantastic option for stress-free entertaining or busy schedules.

Summary

These strawberry cheesecake cupcakes combine nostalgic flavors with convenient individual portions, featuring a graham cracker crust, creamy strawberry filling, and that classic cheesecake texture we all adore. Perfect for gatherings, these make-aight treats capture the essence of summer in every delightful bite.

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